HyperChem Utilities


HyperSpin 3

HyperSpin is a client for HyperChem written by Marcio Cyrillo (cyrillo@ifi.unicamp.br). HyperSpin allows conformational search for dihedral angles and bond distances, using computational methods built in HyperChem. Visit the HyperSpin site http://www.ifi.unicamp.br/gsonm/hyperspin to download the latest version of this software. A copy of the software can also be downloaded here..

Download hyperspin.zip (3.8 Mb)

Readable Snapshot files

SNP2TXT is a utility written by Mirek Sopek of MAKO-LAB in Lodz, Poland. It can convert HyperChem .SNP files into text files so that their contents can be processed more easily by people or by external software. At the moment, we offer a compressed file that includes the C source code and documentation.

Download Snap2Text.zip (118 kB)

Unichem/HyperChem utility package

CONVERT.EXE is a utility package written by Graham Wills-Johnson of the Department of Applied Chemistry, R M I T, in Melbourne, Australia. It can:

(1) Convert .hin files to Unichem (CRAY) format.
 
(2) Write Unichem .txtM charges and co-ordinates back into HyperChem .hin files.
 
(3) Break up very long Hyperchem .log files into 15,000-line segments for input to ASCII editors which cannot handle the entire thing.
 
(4) Extract amplitudes of vibration of individual atoms from data in HyperChem .log files.
 
(5) Write .scr files to establish, or re-establish during iterative processing, alpha and beta backbone regions in proteins.
 

Download CONVERT.EXE (706 kB)

Text Filter

Another useful utility for processing text files (including log files and .HIN files) is the FILTER keyword searcher by Joel Polowin. It can process text files of any size, printing lines that match multiple simultaneous search criteria. Search terms can be independently checked for presence or absence, case-sensitive or not; terms can be linked as "A or B or C ..." Nested files of search terms can be used; the software has options for binary files and a limited sort of "fuzzy searching". This archive file includes documentation and the source code.

Download FILTR30.ZIP (24 kB)

Graphics Workshop

"Graphics Workshop" is shareware by Alchemy Mindworks Inc. We place it here simply so that people can get access to it, and because some of its functions can be useful for manipulating images produced by our software. Specifically, it can convert Windows bitmap files (.BMP), such as those produced by HyperChem, into other formats such as TIFF, PCX, and CompuServe's .GIF . We do not warrant its use, and our providing this access should not be construed as implying recommendation or anything else legally binding. If you find shareware useful, you should register it.

Download GRAF61H.ZIP (367 kB)

MOL-to-MOL Resuscitation

Some software doesn't like the .MOL files that HyperChem writes. Until we can get this sorted out, here's a conversion utility that should process one of our .MOL files to make it palatable to those other programs. It's a DOS program; one would use it in a DOS shell. Typical usage:

HCMOLFIX problem.mol > fixed.mol

Download HCMOLFIX.EXE (28 kB)

Crystallographic File Read-in

We've had occasional requests for a file filter that will let people read crystallographic coordinate files like the ones given regularly in inorganic journals. Such a file typically begins with a line giving crystallographic parameters a, b, c, alpha, beta, gamma and then has lines of atom types and coordinates. The following is a fairly simple DOS program that converts one of these files to .HIN format. Any lines that can't be parsed are kept as comment lines; if the first data line is not parsable as a set of parameters, the coordinates in all data lines are taken to be absolute coordinates. Data values can be separated with spaces or commas; the atom-type entry on each line can either precede or follow the coordinates. Some attempt is made to convert atom names such as "CO213" into atom types such as "Co". This program should be used in a DOS shell. Typical usage:

XRAY2HIN xrayfile.xyz > hinfile.hin

Download XRAY2HIN.EXE (29 kB)

Cartesian coordinate conversion

The Support Desk has also received requests for a file filter that will let people read in a Cartesian coordinate file and output a HIN file. We provide the source code for xray2hin (described in previous section) and encourage you to modify it to suit your specific needs.

Download xray2hin.c (4 kB)

CineChem

CineChem is a utility for converting .HIN files to AutoDesk 3D Studio format. This is a self-extracting archive file; put it into the directory you want, and type 'CINE' from a DOS prompt to extract the files, including documentation.

Download CINE.EXE (604 kB)

Computational Chemistry Index

We have compiled an index for the HyperChem for Windows Computational Chemistry manual (Release 4 or 4.5). (The HyperChem for SGI manual already has an index.)

Download CCINDEX.TXT (index in text format, 15 kB)

Download CCINDEX.EXE (index in PostScript format, compressed file 249 kB)

Network Server Diagnostic Tools

Some users have had difficulty in setting up network license management for HyperChem because of interactions with other network software. The NetSentinel Configuration Guide from Rainbow Technologies is an executable that will "walk you thru setting up a Novell/WFW network with the NetSentinel and any issues or special configuration settings that may need to be made for those environments." The old version of the guide is completely compatible with our software, but is not up-to-date; it does not describe the configuration of servers for Windows 95. (Use the NSRVGX driver, as described for Windows NT.) The new version of the guide is up-to-date but describes some features that are not available for use with HyperChem.

Download NS_GUIDE.EXE (457 kB)

Here are the current network drivers:

Download NEWNET.EXE (274 kB), license server for DOS, Windows, Novell

Download NSRVGX.EXE (296 kB), license server for Win'95 and Windows NT

Download NSRVNI.NLM (68 kB), license server for Novell

 

Here is a diagnostic tool from Rainbow which can help you to see if your network license manager is working properly, how many licenses should be available, etc. The program is for use under DOS or a DOS shell window.

Download DOSMON.EXE (187 kB), DOS-based network license monitor

 

Two new macros become available thanks to Dr. Laszlo JICSINSZKY who also wrote a short readme for each of them. The first macro, NewOpen, explores Visual Basic as an alternative to the Excel macros available through the HyperChem manuals. The second macro, NewCage, creates a cage of solvent molecules /user's choice/ arranging them in a solvation box in a way similar to that implemented in HyperChem. The solute has to be brought manually in the box and subsequently relaxed in the solvation shell.

Download NewOpen.xlm (6 kB), Zip file

Download NewOpen.readme (2 kB), Text file

Download NewCage.xlm (23 kB), Zip file

Download NewCage.readme (3 kB), Text file

Comments? Ideas? Info?

All software on this page is provided free of charge or as shareware. Hypercube assumes no responsibility for its operation, but we do hope you find it useful. We welcome your feedback. Comments, or suggestions for other support utilities, should be directed to: support@hyper.com

[Products] [Sales] [Support] [Science] [News] [Corporate] [Search] [Home]


(c) 2003, Hypercube, Inc. All Rights Reserved.
1115 NW 4th Street, Gainesville, FL 32601 USA
Phone (352) 371-7744 Fax (352) 371-3662 email info@hyper.com